doc. RNDr. Radka Svobodová Vařeková, Ph.D.

2017

• BERKA, K; SEHNAL, D; BAZGIER, V; PRAVDA, L; SVOBODOVA-VAREKOVA, R; OTYEPKA, M; KOCA, J, 2017:Mole 2.5-Tool for Detection and Analysis of Macromolecular Pores and Channels. BIOPHYSICAL JOURNAL 112 (3), p. 292A - 293A.
• PRAVDA, L; SEHNAL, D; VAREKOVA, RS; KOCA, J, 2017:Effective on-Demand Mining of Structural Databases. BIOPHYSICAL JOURNAL 112 (3), p. 348A - 348A.
• SEHNAL, D; DESHPANDE, M; VAREKOVA, RS; MIR, S; BERKA, K; MIDLIK, A; PRAVDA, L; VELANKAR, S; KOCA, J, 2017:Real-Time Interactive Visualisation of Large Macromolecular Assemblies and Molecular Machines at Atomic Resolution. BIOPHYSICAL JOURNAL 112 (3), p. 178A - 178A.
• VAREKOVA, RS; HORSKY, V; SEHNAL, D; BENDOVA, V; PRAVDA, L; KOCA, J, 2017:Quo Vadis, Biomacromolecular Structure Quality. BIOPHYSICAL JOURNAL 112 (3), p. 346A - 347A.

2016

• RACEK, T; PAZURIKOVA, J; VAREKOVA, RS; GEIDL, S; KRENEK, A; FALGINELLA, FL; HORSKY, V; HEJRET, V; KOCA, J, 2016:NEEMP: software for validation, accurate calculation and fast parameterization of EEM charges. JOURNAL OF CHEMINFORMATICS 8

2015

• GEIDL, S; BOUCHAL, T; RAČEK, T; SVOBODOVA VAREKOVA, R; HEJRET, V; KŘENEK, A; ABAGYAN, R; KOČA, J, 2015:High-quality and universal empirical atomic charges for chemoinformatics applications. JOURNAL OF CHEMINFORMATICS 7
• IONESCU, CM; SEHNAL, D; FALGINELLA, FL; PANT, P; PRAVDA, L; BOUCHAL, T; VAREKOVA, RS; GEIDL, S; KOCA, J, 2015:AtomicChargeCalculator: interactive web-based calculation of atomic charges in large biomolecular complexes and drug-like molecules. JOURNAL OF CHEMINFORMATICS 7

2012

• IONESCU, CM; VAREKOVA, RS; PREHN, JHM; HUBER, HJ; KOCA, J, 2012:Charge Profile Analysis Reveals That Activation of Pro-apoptotic Regulators Bax and Bak Relies on Charge Transfer Mediated Allosteric Regulation. PLOS COMPUTATIONAL BIOLOGY 8 (6)
• SEHNAL, D; VAREKOVA, RS; HUBER, HJ; GEIDL, S; IONESCU, CM; WIMMEROVA, M; KOCA, J, 2012:SiteBinder: An Improved Approach for Comparing Multiple Protein Structural Motifs. JOURNAL OF CHEMICAL INFORMATION AND MODELING 52 (2), p. 343 - 359.

2011

• VAREKOVA, RS; GEIDL, S; IONESCU, CM; SKREHOTA, O; KUDERA, M; SEHNAL, D; BOUCHAL, T; ABAGYAN, R; HUBER, HJ; KOCA, J, 2011:Predicting pK(a) Values of Substituted Phenols from Atomic Charges: Comparison of Different Quantum Mechanical Methods and Charge Distribution Schemes. JOURNAL OF CHEMICAL INFORMATION AND MODELING 51 (8), p. 1795 - 1806.