doc. Mgr. Martin Lysák, Ph.D., DSc.

2017

• LEE, CR; WANG, B; MOJICA, JP; MANDÁKOVÁ, T; PRASAD, KV; GOICOECHEA, JL; PERERA, N; HELLSTEN, U; HUNDLEY, HN; JOHNSON, J; GRIMWOOD, J; BARRY, K; FAIRCLOUGH, S; JENKINS, JW; YU, Y; KUDRNA, D; ZHANG, J; TALAG, J; GOLSER, W; GHATTAS, K; SCHRANZ, ME; WING, R; LYSAK, MA; SCHMUTZ, J; ROKHSA,R DS; MITCHELL-OLDS, T, 2017:Young inversion with multiple linked QTLs under selection in a hybrid zone. Nature Ecology & Evolution
• MANDAKOVA, T; HLOUSKOVA, P; GERMAN, DA; LYSAKA, MA, 2017:Monophyletic Origin and Evolution of the Largest Crucifer Genomes. PLANT PHYSIOLOGY 174 (4), p. 2062 - 2071.
• MANDAKOVA, T; LI, Z; BARKER, MS; LYSAK, MA, 2017:Diverse genome organization following 13 independent mesopolyploid events in Brassicaceae contrasts with convergent patterns of gene retention. PLANT JOURNAL 91 (1), p. 3 - 21.
• MANDAKOVA, T; POUCH, M; HARMANOVA, K; ZHAN, SH; MAYROSE, I; LYSAK, MA, 2017:Multispeed genome diploidization and diversification after an ancient allopolyploidization. MOLECULAR ECOLOGY 26 (22), p. 6445 - 6462.
• RABANAL, FA; MANDAKOVA, T; SOTO-JIMENEZ, LM; GREENHALGH, R; PARROTT, DL; LUTZMAYER, S; STEFFEN, JG; NIZHYNSKA, V; MOTT, R; LYSAK, MA; CLARK, RM; NORDBORG, M, 2017:Epistatic and allelic interactions control expression of ribosomal RNA gene clusters in Arabidopsis thaliana. GENOME BIOLOGY 18

2016

• GEISER, C; MANDAKOVA, T; ARRIGO, N; LYSAK, MA; PARISOD, C, 2016:Repeated Whole-Genome Duplication, Karyotype Reshuffling, and Biased Retention of Stress-Responding Genes in Buckler Mustard. PLANT CELL 28 (1), p. 17 - 27.
• JANECKA, J; LYSAK, MA, 2016:chromDraw: an R package for visualization of linear and circular karyotypes. CHROMOSOME RESEARCH 24 (2), p. 217 - 223.
• LYSAK, MA; MANDAKOVA, T; SCHRANZ, ME, 2016:Comparative paleogenomics of crucifers: ancestral genomic blocks revisited. CURRENT OPINION IN PLANT BIOLOGY 30 , p. 108 - 115.
• MANDAKOVA T; LYSAK MA, 2016:Chromosome preparation for cytogenetic analyses in Arabidopsis. CURRENT PROTOCOLS IN PLANT BIOLOGY (1), p. 43 - 51.
• MANDAKOVA T; LYSAK MA, 2016:Painting of Arabidopsis chromosomes with chromosome-specific BAC Clones. CURRENT PROTOCOLS IN PLANT BIOLOGY , p. 359 - 371.
• MANDAKOVA, T; GLOSS, AD; WHITEMAN, NK; LYSAK, MA, 2016:How diploidization turned a tetraploid into a pseudotriploid. AMERICAN JOURNAL OF BOTANY 103 (7), p. 1187 - 1196.

2015

• HOHMANN, N; WOLF, EM; LYSAK, MA; KOCH, MA, 2015:A time-calibrated road map of Brassicaceae species radiation and evolutionary history. PLANT CELL 27 , p. 2770 - 2784.
• CHENG, F; LYSAK, MA; MANDÁKOVÁ, T; WANG, X, 2015:The common ancestral genome of the Brassica species. In: Wang X, Kole Ch (eds.) The Brassica rapa Genome. Springer. , p. 97 - 106.
• KELLY, LJ; RENNY-BYFIELD; PELLICER, J; MACAS, J; NOVÁK, P; NEUMANN, P; LYSAK, MA; DAY, PD; BERGER, M; FAY, MF; NICHOLS, RA; LEITCH, AR; LEITCH, IJ, 2015:Analysis of the giant genomes of Fritillaria (Liliaceae) indicates that a lack of DNA removal characterizes extreme expansions in genome size. NEW PHYTOLOGIST 208 (2), p. 596 - 607.
• LYSAK, MA, 2015:Chromosome "fusions" in karyotype evolution. MCGRAW-HILL YEARBOOK OF SCIENCE & TECHNOLOGY 2015 , p. 50 - 53.
• MANDAKOVA, T; SCHRANZ, ME; SHARBEL, TF; DE JONG, H; LYSAK, MA, 2015:Karyotype evolution in apomictic Boechera and the origin of the aberrant chromosomes. PLANT JOURNAL 82 (5), p. 785 - 793.
• MANDAKOVA, T; SINGH, V; KRAMER, U; LYSAK, MA, 2015:Genome Structure of the Heavy Metal Hyperaccumulator Noccaea caerulescens and Its Stability on Metalliferous and Nonmetalliferous Soils. PLANT PHYSIOLOGY 169 (1), p. 674 - 689.
• TAN, EH; HENRY, IM; RAVI, M; BRADNAM, KR; MANDAKOVA, T; MARIMUTHU, MP; KORF, I; LYSAK, MA; COMAI, L; CHAN, SW, 2015:Catastrophic chromosomal restructuring during genome elimination in plants. ELIFE 4 , p. e06516 - .
• WILLING, E-M; RAWAT, V; MANDÁKOVÁ, T; MAUMUS, F; VELIKKAKAM JAMES, G; NORDSTRÖM, KJV; BECKER, C; WARTHMANN, N; CHICA, C; SZARZYNSKA, B; ZYTNICKI, M; ALBANI, MC; KIEFER, C; BERGONZI, S; CASTAINGS, L; MATEOS, JL; BERNS, MC; BUJDOSO, N; PIOFCZYK, T; DE LORENZO, L; BARRERO-SICILIA, C; MATEOS, I; PIEDNOËL, M; HAGMANN, J; CHEN-MIN-TAO, R; IGLESIAS-FERNÁNDEZ, R; SCHUSTER, SC; ALONSO-BLANCO, C; ROUDIER, F; CARBONERO, P; PAZ-ARES, J; DAVIS, SJ; PECINKA, A; QUESNEVILLE, H; COLOT, V; LYSAK, MA; WEIGEL, D; COUPLAND, G; SCHNEEBERGER, K, 2015:Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation. NATURE PLANTS 1 (2), p. 1 - 7.

2014

• HAY, AS; PIEPER, B; COOKE, E; MANDAKOVA, T; CARTOLANO, M; TATTERSALL, AD; IOIO, RD; MCGOWAN, SJ; BARKOULAS, M; GALINHA, C; RAST, MI; HOFHUIS, H; THEN, C; PLIESKE, J; GANAL, M; MOTT, R; MARTINEZ-GARCIA, JF; CARINE, MA; SCOTLAND, RW; GAN, XC; FILATOV, DA; L, 2014:Cardamine hirsuta: a versatile genetic system for comparative studies. PLANT JOURNAL 78 (1), p. 1 - 15.
• KIEFER, M; SCHMICKL, R; GERMAN, DA; MANDAKOVA, T; LYSAK, MA; AL-SHEHBAZ, IA; FRANZKE, A; MUMMENHOFF, K; STAMATAKIS, A; KOCH, MA, 2014:BrassiBase: Introduction to a Novel Knowledge Database on Brassicaceae Evolution. PLANT AND CELL PHYSIOLOGY 55 (1), p. e3 - .
• LYSAK, MA, 2014:Live and let die: centromere loss during evolution of plant chromosomes. NEW PHYTOLOGIST 203 (4), p. 1082 - 1089.
• MAJEROVA, E; MANDAKOVA, T; VU, GTH; FAJKUS, J; LYSAK, MA; FOJTOVA, M, 2014:Chromatin features of plant telomeric sequences at terminal vs. internal positions. FRONTIERS IN PLANT SCIENCE 5 , p. 593 - .
• MANDAKOVA, T; MARHOLD, K; LYSAK, MA, 2014:The widespread crucifer species Cardamine flexuosa is an allotetraploid with a conserved subgenomic structure. NEW PHYTOLOGIST 201 (3), p. 982 - 992.
• ZOZOMOVA-LIHOVA, J; KRAK, K; MANDAKOVA, T; SHIMIZU, KK; SPANIEL, S; VIT, P; LYSAK, MA, 2014:Multiple hybridization events in Cardamine (Brassicaceae) during the last 150 years: revisiting a textbook example of neoallopolyploidy. ANNALS OF BOTANY 113 (5), p. 817 - 830.
• ZOZOMOVA-LIHOVA, J; MANDAKOVA, T; KOVARIKOVA, A; MUHLHAUSEN, A; MUMMENHOFF, K; LYSAK, MA; KOVARIK, A, 2014:When fathers are instant losers: homogenization of rDNA loci in recently formed Cardamine X schulzii trigenomic allopolyploid. NEW PHYTOLOGIST 203 (4), p. 1096 - 1108.

2013

• HAUDRY, A; PLATTS, AE; VELLO, E; HOEN, DR; LECLERCQ, M; WILLIAMSON, RJ; FORCZEK, E; JOLY-LOPEZ, Z; STEFFEN, JG; HAZZOURI, KM; DEWAR, K; STINCHCOMBE, JR; SCHOEN, DJ; WANG, XW; SCHMUTZ, J; TOWN, CD; EDGER, PP; PIRES, JC; SCHUMAKER, KS; JARVIS, DE; MANDAKOVA, 2013:An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions. NATURE GENETICS 45 (8), p. 891 - U228.
• LONG, Q; RABANAL, FA; MENG, DZ; HUBER, CD; FARLOW, A; PLATZER, A; ZHANG, QR; VILHJALMSSON, BJ; KORTE, A; NIZHYNSKA, V; VORONIN, V; KORTE, P; SEDMAN, L; MANDAKOVA, T; LYSAK, MA; SEREN, U; HELLMANN, I; NORDBORG, M, 2013:Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden. NATURE GENETICS 45 (8), p. 884 - U218.
• MANDAKOVA, T; KOVARIK, A; ZOZOMOVA-LIHOVA, J; SHIMIZU-INATSUGI, R; SHIMIZU, KK; MUMMENHOFF, K; MARHOLD, K; LYSAK, MA, 2013:The More the Merrier: Recent Hybridization and Polyploidy in Cardamine. PLANT CELL 25 (9), p. 3280 - 3295.
• SLOTTE, T; HAZZOURI, KM; AGREN, JA; KOENIG, D; MAUMUS, F; GUO, YL; STEIGE, K; PLATTS, AE; ESCOBAR, JS; NEWMAN, LK; WANG, W; MANDAKOVA, T; VELLO, E; SMITH, LM; HENZ, SR; STEFFEN, J; TAKUNO, S; BRANDVAIN, Y; COOP, G; ANDOLFATTO, P; HU, TT; BLANCHETTE, M; CL, 2013:The Capsella rubella genome and the genomic consequences of rapid mating system evolution. NATURE GENETICS 45 (7), p. 831 - U165.

2012

• MANDAKOVA, T; MUMMENHOFF, K; AL-SHEHBAZ, IA; MUCINA, L; MUHLHAUSEE, A; LYSAK, MA, 2012:Whole-genome triplication and species radiation in the southern African tribe Heliophileae (Brassicaceae). TAXON 61 (5), p. 989 - 1000.

2011

• FRANZKE, A; LYSAK, MA; AL-SHEHBAZ, IA; KOCH, MA; MUMMENHOFF, K, 2011:Cabbage family affairs: the evolutionary history of Brassicaceae. TRENDS IN PLANT SCIENCE 16 (2), p. 108 - 116.
• SCHUBERT, I; LYSAK, MA, 2011:Interpretation of karyotype evolution should consider chromosome structural constraints. TRENDS IN GENETICS 27 (6), p. 207 - 216.

2010

• MANDAKOVA, T; JOLY, S; KRZYWINSKI, M; MUMMENHOFF, K; LYSAK, MA, 2010:Fast Diploidization in Close Mesopolyploid Relatives of Arabidopsis. PLANT CELL 22 (7), p. 2277 - 2290.

Pracoviště 1:	Masarykova univerzita - CEITEC MU Kamenice 753/5, Brno, 625 00, kancelář bud. A26/327
Pracoviště 2:	Masarykova univerzita