Abstract
New generation sequencing (NGS) is becoming a method of choice for an ever growing number of applications in both research and clinics. However, subsequent NGS data analysis still creates a backlog in the process, since designing appropriate analytical pipeline tailored to the data is a daunting task. In this course we will present standard logical steps and reasoning behind a creation of analytical pipelines for the most common NGS experiments. The course will also address the problem of organising and managing analytical workflows in order to maintain a sustainable bioinformatics service.
Speakers:
- Charles Girardot - EMBL
- Tobias Rausch - EMBL
- Jonathan Landry - EMBL
- Jan Provaznik - EMBL
- Vojtech Bystry - CEITEC
- Jan Oppelt - CEITEC
Programme
| Monday, December 4 | |
|---|---|
| 9:00-9:15 | Introduction |
| 9:15-10:00 | Immunoglobulin NGS Analysis |
| 10:00-10:30 | Genome Assembly and Long Read Sequencing |
| 10:30-11:00 | Coffee Break |
| 11:00-11:45 | CHIP-seq analysis |
| 11:45-12:30 | RNAseq Analysis |
| 12:30-14:00 | Lunch |
| 14:00-14:45 | Cancer Genomics Analysis - Variant Calling |
| 14:45-15:15 | Coffee Break |
| 15:15-16:00 | Cancer Genomics Analysis - Variant Calling |
| 18:00 | Dinner + Discussion in CEITEC Atrium |
| Tuesday, December 5 | |
|---|---|
| 9:00-9:45 | Lims Problematic |
| 9:45-10:30 | Bioinformatics Workflow Management with Snakemake |
| 10:30-11:00 | Coffee Break |
| 11:00-12:00 | Galaxy Server |
Registration is closed
